Barbara McClintock · Proc. Natl. Acad. Sci. USA 36 (1950): 344–355 · Carnegie Institution of Washington, Department of Genetics, Cold Spring Harbor, New York
The question
The paper sets out to explain where "mutable loci" come from — genes that mutate at unusually high rates and in patterned, developmentally timed ways, betraying themselves as flecks and sectors of colour in the kernel and plant. Such unstable loci, McClintock reports, arose repeatedly at predictable places after chromosomes had been put through a cycle of breaking and rejoining.
The breakage–fusion–bridge cycle
She first lays out the cytological machinery she had established earlier: a broken chromosome end fuses with its sister after replication, forms a bridge that is torn apart again at the next division, and so breaks anew — a self-perpetuating cycle that fractures the same region over and over. It was in chromosome 9, repeatedly broken this way, that the new mutable loci kept appearing.
Dissociation (Ds)
At one recurring site she identifies an element she names Dissociation (Ds): it marks the spot where the chromosome breaks. The decisive observation is that Ds does not stay put — across generations of crosses its position changes, and where it lands it can disrupt the genes nearby.
Activator (Ac)
Ds, however, does nothing on its own. Its breakage and movement happen only when a second element — Activator (Ac) — is present, even when Ac sits elsewhere on the chromosome set. Ac is itself mobile, and the paper notes that the amount of Ac matters: changing its dose shifts the timing of Ds's action during development.
Mutable loci and variegation
When such an element comes to rest in or beside a pigment gene, it switches the gene off, giving a colourless background; if the element later leaves a cell, that cell and all its descendants recover the gene's function and make pigment — a clone of coloured tissue. The size of each spot therefore records WHEN the change happened: early events give large sectors, late events give fine speckling. The patterns on the kernel are a direct read-out of genes moving inside living cells.
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The conclusion
McClintock concludes that genetic elements are not fixed in place: they can transpose, and in doing so they govern when and where other genes are expressed — what she would soon call "controlling elements." The full argument, built on years of maize genetics and chromosome cytology and running to about a dozen pages of crosses and tables, is available in full at the source below.
Cold Spring Harbor, New York · 1950