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The Karyotype: Seeing & Numbering the 46

How scientists photograph a cell's chromosomes, line them up by size into a karyotype, and read it to spot autosomes, sex chromosomes, and changes in number.

From a cell to a sorted portrait

A karyotype is a complete picture of all of a cell's chromosomes, photographed when they are most condensed and then arranged in a standard order. It is the foundational tool of cytogenetics — the study of chromosomes under the microscope — and it lets you literally count and inspect the set.

  1. Collect dividing cells and stop them at the stage where chromosomes are most condensed and visible.
  2. Swell and burst the cells so the chromosomes spread out without overlapping.
  3. Stain them so each chromosome shows a unique pattern of light and dark bands.
  4. Photograph the spread, then sort the chromosomes by size, centromere position, and banding.
  5. Pair up the homologs and number them 1 to 22, with the sex chromosomes placed last.

Autosomes, sex chromosomes, and reading the result

Of the 23 pairs, 22 are autosomes — the chromosomes numbered 1 to 22, which are the same in everyone. The 23rd pair are the sex chromosomes. A typical female karyotype has two X chromosomes (written 46,XX); a typical male has one X and one Y chromosome (46,XY). The X is large and gene-rich; the Y is small and carries far fewer genes.

Because every chromosome has an expected size, count, and banding pattern, a karyotype makes departures from the norm visible at a glance. An extra or missing whole chromosome — aneuploidy — shows up as the wrong number. The best-known example is trisomy 21, three copies of chromosome 21 instead of two, written 47,XX,+21 or 47,XY,+21. Reading a karyotype is descriptive, not a diagnosis on its own; it is one careful observation that doctors and geneticists interpret in context.

Reading the shorthand of a karyotype:

  46,XX        total 46 chromosomes; two X  -> typical female set
  46,XY        total 46 chromosomes; X and Y -> typical male set
  47,XY,+21    47 total; XY; one extra #21  -> trisomy 21
  45,X         only 45; a single X, no partner -> a missing sex chromosome

  Read it as:  [ total count ] , [ sex chromosomes ] , [ what changed ]
Karyotype notation: the total number, then the sex chromosomes, then any change.